1.Huiling Yang, Chenxu Ding, Yuanwen Duan,Jianquan Liu. Variation of active constituents of an important Tibet folk medicine Swertia mussotii Franch. (Gentianaceae) between artificially cultivated and naturally distributed,Journal of Ethnopharmacology 2005 98: 31-35.
2. Huiling Yang, Yuanwen Duan, Fengzu Hu, Jianquan Liu, Lack of altitudinal trends in phytochemical constituents of Swertia franchetiana (Gentianaceae), Biochemical Systematics and Ecology, 2004,32: 861-866.
3. Yang huiling, Liu jianquan, Seed germination of Swertia mussotii (Gentianaceae), a threatened biennial with an important appliction in Tibetan folk medicine, Acta Botanica Yunnanica, 2005,27:(3)295-300.
4. 杨慧玲,刘建全, “藏茵陈”原植物种类中的有效化学成分含量研究, 中草药,2005,36(8):1233-1237.
5. 杨慧玲,刘建全, 不同地区和生长物候期藏药花锚有效成分齐墩果酸的含量变化研究, 中国药学杂志, 2004,39: 659-660
6. 杨慧玲,段元文, 刘建全,两种栽培藏茵陈类植物的引种地繁殖系统研究,西北植物学报,27(12):2411-2415.
7. 侯勤正,孟丽华,杨慧玲, 管花秦艽的传粉生态学研究——兼与同域分布近缘种的比较, 植物分类学报,46 (4): 554–562 (2008)(通讯作者).
8. 侯勤正,段元文,司庆文,杨慧玲,青藏高原晚期开花植物线叶龙胆(龙胆科)的传粉生态学研究,植物生态学报2009(通讯作者).
9. Xiaojuan Li,Huiling Yang, Jianquan Liu,Genetic variation within and between populations of the Qinghai-Tibetan plateau endemic Gentiana straminea (Gentianaceae) revealed by RAPD markers,Belg. J. Bot. 141 (1) : 95-102 (2008).
10.孟丽华,杨慧玲,王玉金,基于叶绿体DNA trnL-F序列研究肋果沙棘的谱系地理学,植物分类学报,2008,46(1):32-40.
11. 刘建全,何亚平,杨慧玲,掌裂橐吾的胚胎学,西北植物学报,2001,21(5):900-904.
12. Xiaojuan Li, Huiling Yang, Jianquan Liu,Confirmation of natural hybrids between Gentiana stramainea and G. siphonantha (Gentianaceae) based on molecular evidence,Front. Biol.China 2008,3(4): 470-476.
13. Molecular phylogeny and biogeography of Gentiana sect. Cruciata (Gentianaceae) based on four chloroplast DNA data sets ,Taxon (in press) (SCI).
14. 李小娟,王留阳,杨慧玲,麻花艽和管花秦艽(龙胆科)之间自然杂交类型的分子验证,云南植物研究,2007,29(1)91-97.
15. 何亚平,刘建全,杨慧玲,青藏高原天山报春高寒湿地种群的花期资源分配,应用与环境生物学报2008(02):180-186.